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QGRS Mapper 2 | Research Tools
QGRS Search Options  Max length:   Min G-group:   HELPMax QGRS Length (default is 30)

You can limit the maximum length of the QGRS sequences. The shortest possible QGRS is 10 nucleotides.


Minimum G-Group size (default is 2)

The minimum number of tetrads in a G-quadruplex. For instance, QGRS with G-group size of 4 might look like:

GGGGGAGGGGTGGGGGCTAGGGG
   Loop size: to   Loops contain:   HELPLoop size (default is from 0 to 36)

The user may specify a range of possible lengths for the loops. The range will apply to all three loops of the QGRS. By default, it will search for any loops.

Loops that contain sequence

You can specify a nucleotide sequence that at least one of the loops must contain. You can also specify a regular expression. For instance, a{4,} will search for loops with 4 or more consecutive A's.
Individual Sequence Analysis Tools
Map QGRS in pre-mRNA
Investigate the role of QGRS in pre-mRNA.
Map QGRS in mRNA
Investigate the role of QGRS in mature mRNA.
Map ESEs to QGRS in pre-mRNA
Identify mapped QGRS that overlap ESEs.
Analyze a FASTA / RAW Sequence
Look for QGRS in a FASTA or RAW sequence.
Batch Sequence Analysis Tools
Analyze a set of FASTA Sequences
Look for QGRS in several FASTA sequences.
Analyze a list of mRNA Sequences
Request data on several mRNA sequences.

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